WebTo run Hail interactively on our clusters: (base) UserID@bell-fe00:~ $ sinteractive -N1 -n12 -t4:00:00 -A myallocation salloc: Granted job allocation 12345869 salloc: Waiting for resource configuration salloc: Nodes bell-a008 are ready for job (base) UserID@bell-a008:~ $ module load biocontainers hail (base) UserID@bell-a008:~ $ python3 Python ... WebSep 17, 2024 · Welcome to the HiCExplorer GitHub repository! Before opening the issue please check that the following requirements are met : Search whether this issue (or a similar issue) has been solved before using the search tab above. Link the previous issue if appropriate below.
hicConvertFormat : .hic file to .h5 conversion #601 - GitHub
WebMar 22, 2024 · Hi, having trouble with the conda install. Specifically: >>conda create --name hicexplorer hicexplorer=3.6 python=3.8 -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: failed with r... WebAug 9, 2024 · The text was updated successfully, but these errors were encountered: jay station here
Having Issues using HiCExplorer with .hic files generated from ... - GitHub
WebHiCExplorer¶ Set of programs to process, normalize, analyze and visualize Hi-C and cHi-C data¶ HiCExplorer addresses the common tasks of Hi-C data analysis from processing … Webdescription='Conversion of Hi-C matrices of different file formats. We support the conversion of hic to cool format via hic2cool, '. 'and homer, HicPro, h5 and cool format to h5, cool, homer or ginteractions format. Moreover, hicConvertFormat accepts multiple input files '. ' from one format with different resolutions and creates a mcool file. HiCExplorer is available as a command line suite of tools on this very GitHub repository and also on other platforms (detailed in Installationbelow). A Galaxy HiCExplorer version is directly available to users at http://hicexplorer.usegalaxy.eu. Training material is available at the Galaxy Training Network,while … See more Joachim Wolff, Leily Rabbani, Ralf Gilsbach, Gautier Richard, Thomas Manke, Rolf Backofen, Björn A Grüning.Galaxy … See more Please visit our complete documentation Here. This documentation is also available directly within Galaxy. See more With version 3.0, HiCExplorer is available for Python 3 only, the Python 2 support is discontinued. HiCExplorer can be installed with conda. 1. … See more jaystation halloween flix