Tsrchitect
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Tsrchitect
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http://bioconductor.jp/packages/3.9/bioc/manuals/TSRchitect/man/TSRchitect.pdf WebTSRchitect allows the user to efficiently identify the putative promoter (the transcription start region, or TSR) from a variety of TSS profiling data types, including both single-end …
WebApplication of Transcription Start Site (TSS) profiling technologies, coupled with large-scale next-generation sequencing (NGS) has yielded valuable insights into the location, structure, and activity of promoters across diverse metazoan model systems. In insects, TSS profiling has been used to char … WebNov 8, 2024 · In TSRchitect: Promoter identification from large-scale TSS profiling data. Description Usage Arguments Value. Description. An internal function, which is invoked …
WebTSRchitect allows the user to efficiently identify the putative promoter (the transcription start region, or TSR) from a variety of TSS profiling data types, including both single-end (e.g. CAGE) as well as paired-end (RAMPAGE, PEAT, STRIPE-seq). In addition, (new with version 1.3.0) TSRchitect provides the ability to import aligned EST and ... WebFinally, TSRchitect imports annotation files, allowing the user to associate identified promoters with genes and other genomic features. Three detailed examples of …
WebTSRchitect allows the user to efficiently identify the putative promoter (the transcription start region, or TSR) from a variety of TSS profiling data types, including both single-end (e.g. CAGE) as well as paired-end (RAMPAGE, PEAT, STRIPE-seq). In addition, (new with version 1.3.0) TSRchitect provides the ability to import aligned EST and ...
WebTSRchitect allows the user to efficiently identify the putative promoter (the transcription start region, or TSR) from a variety of TSS profiling data types, including both single-end (e.g. CAGE) as well as paired-end (RAMPAGE, PEAT, STRIPE-seq). In addition, (new with version 1.3.0) TSRchitect provides the ability to import aligned EST and ... bird key homes for sale sarasota flWebFeb 3, 2024 · Finally, TSRchitect imports annotation files, allowing the user to associate identified promoters with genes and other genomic features. Three detailed examples of … damask bunny dinnerware collectionWebMar 28, 2015 · TSRchitect Public Promoter identification from diverse types of large-scale TSS profiling data R 1 GPL-3.0 4 2 1 Updated Jan 3, 2024. GoSTRIPES Public Computational workflows for STRIPE-seq data analyses Perl 4 5 0 0 Updated Dec 25, 2024. bgSingularityHub Public damask comforter washing instructionsWebIt allows the user to efficiently identify the putative promoter from a variety of TSS profiling data types, including both single-end as well as paired-end. In addition, it provides the … bird key sarasota homes for saleWebNov 4, 2024 · TSRchitect and CAGEr also include functions (inputToTSS(), getCTSSs(), respectively) for obtaining CTSSs from BAM-files from within R, with CAGEr having the option of correcting for G-bias when mapping. CAGEfightR can analyze many types of 5’-end data, as long as they can be represented in a format similar to CTSSs. bird keystone speciesWebDec 16, 2024 · TSRchitect is an open-source bioinformatics package that is intended to support large-scale, reproducible analysis of TSS profiling data in a broad array of … bird key yacht club lunch menuWebJun 27, 2024 · TSRchitect User's Guide. R. Taylor Raborn and Volker P. Brendel; Department of Biology, Indiana University; First edition 25 January 2024; Updated 27 June 2024; Getting started; Example 1: Identifying promoters from RAMPAGE data derived from two human cell lines. Associating identified TSRs with gene annotations bird key yacht club cost